Heatmaps for DPSC Analysis

This file uses the RPKM counts table found in ../data/processed/rpkm_table.csv to calcualte a heatmap. This script was most recently run on Tue Jun 16 16:06:11 2015.

Analysis of All Genes Combined

Analysis of GTX in Liver

Analysis of HF diet effect on Liver

Analysis of GTX vs vehicle in WAT

Analysis of HF diet in WAT

Analysis of All Genes Combined using Average Counts

Analysis of GTX in Liver Average

Analysis of HF diet effect on Liver Average

Analysis of GTX vs vehicle in WAT Average

Analysis of HF diet in WAT Average

Session Information

## R version 3.1.2 (2014-10-31)
## Platform: x86_64-apple-darwin13.4.0 (64-bit)
## 
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] heatmap.plus_1.3   Heatplus_2.12.0    RColorBrewer_1.1-2
## [4] gplots_2.17.0     
## 
## loaded via a namespace (and not attached):
##  [1] bitops_1.0-6       caTools_1.17.1     digest_0.6.8      
##  [4] evaluate_0.7       formatR_1.2        gdata_2.16.1      
##  [7] gtools_3.4.2       htmltools_0.2.6    KernSmooth_2.23-14
## [10] knitr_1.10.5       magrittr_1.5       rmarkdown_0.5.1   
## [13] stringi_0.4-1      stringr_1.0.0      tools_3.1.2